Pathogen workflow status

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Generated at by nextstrain/status for repos using our shared pathogen-repo-build.yaml workflow.

avian-flu #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic-ncbi.yaml)

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chikv #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

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Phylogenetic (.github/workflows/phylogenetic.yaml)

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dengue #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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ebola #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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forecasts-flu #

Run models (.github/workflows/run-models.yaml)

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forecasts-ncov #

COVID-19 case counts (.github/workflows/update-ncov-case-counts.yaml)

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GISAID SARS-CoV-2 clade counts (.github/workflows/update-ncov-gisaid-clade-counts.yaml)

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Open SARS-CoV-2 clade counts (.github/workflows/update-ncov-open-clade-counts.yaml)

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Run models (.github/workflows/run-models.yaml)

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Run USA models (.github/workflows/run-usa-models.yaml)

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hmpv #

Ingest (.github/workflows/ingest.yaml)

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Phylogenetic (.github/workflows/phylogenetic.yaml)

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lassa #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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measles #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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mpox #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

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Rebuild clade-I (.github/workflows/rebuild-clade-i.yaml)

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Rebuild hmpxv1 (.github/workflows/rebuild-hmpxv1.yaml)

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Rebuild hmpxv1-big (.github/workflows/rebuild-hmpxv1-big.yaml)

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Rebuild mpxv (.github/workflows/rebuild-mpxv.yaml)

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    run details repository_dispatch 97712d3a

mumps #

Ingest (.github/workflows/ingest.yaml)

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Phylogenetic (.github/workflows/phylogenetic.yaml)

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ncov #

Rebuild 100k sample (.github/workflows/rebuild-100k.yml)

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Rebuild GISAID 21L phylogenetic datasets (.github/workflows/rebuild-gisaid-21L.yml)

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Rebuild GISAID phylogenetic datasets (.github/workflows/rebuild-gisaid.yml)

  1. run details workflow_dispatch 8d17e30b
  2. run details repository_dispatch 77269721

Rebuild open (GenBank) phylogenetic datasets (.github/workflows/rebuild-open.yml)

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  7. run details repository_dispatch faba02ec
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  14. run details repository_dispatch 77269721

ncov-ingest #

GenBank fetch and ingest (.github/workflows/fetch-and-ingest-genbank-master.yml)

  1. run details schedule dd264b7c
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  3. run details workflow_dispatch dd264b7c
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GISAID fetch and ingest (.github/workflows/fetch-and-ingest-gisaid-master.yml)

  1. run details workflow_dispatch dd264b7c
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  7. run details attempt #3 workflow_dispatch 3ba27f1e
  8. run details attempt #2 workflow_dispatch 3ba27f1e
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  10. run details attempt #2 workflow_dispatch 3ba27f1e
  11. run details workflow_dispatch 3ba27f1e
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  13. run details workflow_dispatch a779168f
  14. run details schedule 8689e837

nipah #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule 25ebc251
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Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run 25ebc251
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  3. run details workflow_run 25ebc251
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  11. run details workflow_run be25ce2f
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  14. run details workflow_run be25ce2f
  15. run details workflow_run 1017989b
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norovirus #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule 3465c57c
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Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run 3465c57c
  2. run details workflow_run 3465c57c
  3. run details workflow_run 3465c57c
  4. run details workflow_run 3465c57c
  5. run details workflow_run 3465c57c
  6. run details workflow_run 3465c57c
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  11. run details workflow_run 9cbcf2f5
  12. run details workflow_run fcdee327
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  27. run details workflow_run fcdee327
  28. run details workflow_run fcdee327
  29. run details workflow_run fcdee327
  30. run details workflow_run fcdee327

oropouche #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule 90348f94
  2. run details schedule 90348f94
  3. run details schedule 90348f94
  4. run details schedule 90348f94
  5. run details schedule 90348f94
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  27. run details schedule ffae98ba
  28. run details schedule ffae98ba
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Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run 90348f94
  2. run details workflow_run 90348f94
  3. run details workflow_run 90348f94
  4. run details workflow_run 90348f94
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  6. run details workflow_run 90348f94
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  11. run details workflow_run ffae98ba
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  28. run details workflow_run ffae98ba
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rabies #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 2e6c55c9
  2. run details schedule 2e6c55c9
  3. run details schedule 2e6c55c9
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  11. run details schedule 62f66769
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rsv #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

  1. run details schedule fc6c095c
  2. run details workflow_dispatch fc6c095c
  3. run details schedule fc6c095c
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  8. run details schedule 30ff62fc
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  10. run details schedule 351898bb
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Rebuild RSV analysis (.github/workflows/rebuild.yaml)

  1. run details schedule fc6c095c
  2. run details workflow_dispatch fc6c095c
  3. run details workflow_dispatch fc6c095c
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  8. run details schedule 30ff62fc
  9. run details schedule 401279d4
  10. run details schedule 8843c645
  11. 🛇
    run details schedule 351898bb
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rubella #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule 590f22f6
  2. run details schedule 590f22f6
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  8. run details schedule f1e603a0
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  12. run details schedule a6a1e5c3
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  28. run details schedule a6a1e5c3
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Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run 590f22f6
  2. run details workflow_run 590f22f6
  3. run details workflow_run 590f22f6
  4. run details workflow_run 590f22f6
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  8. run details workflow_run f1e603a0
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  11. run details workflow_run f1e603a0
  12. run details workflow_run a6a1e5c3
  13. 🛇
    run details workflow_dispatch a6a1e5c3
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  17. run details workflow_run a6a1e5c3
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  29. run details workflow_run a6a1e5c3
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seasonal-cov #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule 2ce3e7e5
  2. run details schedule 2ce3e7e5
  3. run details schedule 2ce3e7e5
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Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run 2ce3e7e5
  2. run details workflow_run 2ce3e7e5
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  5. run details workflow_run 2ce3e7e5
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  28. run details workflow_run 2ce3e7e5
  29. run details workflow_run 2ce3e7e5
  30. run details workflow_run 2ce3e7e5

seasonal-flu #

Ingest (.github/workflows/ingest.yaml)

  1. run details workflow_dispatch 142f13ad
  2. run details workflow_dispatch 2a92ee2d
  3. run details workflow_dispatch 2a92ee2d
  4. run details workflow_dispatch 9b485db7
  5. run details workflow_dispatch da86666d
  6. run details workflow_dispatch d3483f3b
  7. run details workflow_dispatch 4d57ce71

Run Nextclade on all sequences (.github/workflows/run-nextclade.yaml)

  1. run details workflow_dispatch f28935b4
  2. run details workflow_dispatch d3947d22

Run Nextstrain builds for the nextflu-private group (.github/workflows/run-nextflu-private-builds.yaml)

  1. run details workflow_dispatch 5a94edb6
  2. run details workflow_dispatch 107844bb
  3. run details workflow_dispatch 70877f2a
  4. run details workflow_dispatch f28935b4
  5. run details workflow_dispatch 1dc86610
  6. run details workflow_dispatch 2a92ee2d
  7. run details workflow_dispatch 2a92ee2d
  8. run details workflow_dispatch 2a92ee2d
  9. run details workflow_dispatch 9b485db7
  10. run details workflow_dispatch 2ef6092c
  11. run details workflow_dispatch da86666d
  12. run details workflow_dispatch 10bed153
  13. run details workflow_dispatch 372dba98
  14. run details workflow_dispatch d3483f3b
  15. run details workflow_dispatch 4d57ce71

Run the Nextstrain public builds (.github/workflows/run-public-builds.yaml)

  1. run details workflow_dispatch 5a94edb6
  2. run details workflow_dispatch 107844bb
  3. run details workflow_dispatch 70877f2a
  4. run details workflow_dispatch f28935b4
  5. run details workflow_dispatch 1dc86610
  6. run details workflow_dispatch 2a92ee2d
  7. run details workflow_dispatch 2a92ee2d
  8. run details workflow_dispatch 2a92ee2d
  9. run details workflow_dispatch 9b485db7
  10. run details workflow_dispatch dcd82762
  11. run details workflow_dispatch 2ef6092c
  12. run details workflow_dispatch 10bed153
  13. run details workflow_dispatch 372dba98
  14. run details workflow_dispatch d3483f3b
  15. run details workflow_dispatch 4d57ce71

Run the private Nextflu builds (.github/workflows/run-private-nextflu-builds.yaml)

  1. run details schedule f28935b4
  2. run details schedule 9b485db7
  3. run details schedule d3483f3b

Upload data from fauna to S3 (.github/workflows/upload.yaml)

  1. run details workflow_dispatch 5a94edb6
  2. run details workflow_dispatch 107844bb
  3. run details workflow_dispatch 70877f2a
  4. run details workflow_dispatch f28935b4
  5. run details workflow_dispatch 1dc86610
  6. run details workflow_dispatch 2a92ee2d
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  8. run details workflow_dispatch 2a92ee2d
  9. run details workflow_dispatch 9b485db7
  10. run details workflow_dispatch 2ef6092c
  11. run details workflow_dispatch 10bed153
  12. run details workflow_dispatch 372dba98
  13. run details workflow_dispatch d3483f3b
  14. run details workflow_dispatch 4d57ce71

tb #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 2d90dd89
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WNV #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 009e0183
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yellow-fever #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule 9ff4c799
  2. run details schedule 9ff4c799
  3. run details schedule 9ff4c799
  4. run details schedule 9ff4c799
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  11. run details schedule 2e24a635
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  16. run details attempt #2 schedule 2e24a635
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  28. run details schedule 2e24a635
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Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run 9ff4c799
  2. run details workflow_run 9ff4c799
  3. run details workflow_run 9ff4c799
  4. run details workflow_run 9ff4c799
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  8. run details workflow_run 9ff4c799
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  10. run details workflow_run 9ff4c799
  11. run details workflow_run 2e24a635
  12. run details workflow_run 2e24a635
  13. run details workflow_run 2e24a635
  14. run details workflow_run 2e24a635
  15. run details workflow_run 2e24a635
  16. run details workflow_run 2e24a635
  17. run details workflow_run 2e24a635
  18. run details workflow_run 2e24a635
  19. run details workflow_run 2e24a635
  20. run details workflow_run 2e24a635
  21. run details workflow_run 2e24a635
  22. run details workflow_run 2e24a635
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  25. run details workflow_run 2e24a635
  26. run details workflow_run 2e24a635
  27. run details workflow_run 2e24a635
  28. run details workflow_run 2e24a635
  29. run details workflow_run 2e24a635
  30. run details workflow_run 2e24a635

zika #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule d72cdcc0
  2. run details schedule d72cdcc0
  3. run details schedule d72cdcc0
  4. run details schedule d72cdcc0
  5. run details schedule d72cdcc0
  6. run details schedule d72cdcc0
  7. run details schedule d72cdcc0
  8. run details schedule d72cdcc0
  9. run details schedule d72cdcc0
  10. run details schedule d72cdcc0
  11. run details schedule 55a8d4cb
  12. run details schedule 55a8d4cb
  13. run details schedule 55a8d4cb
  14. run details schedule 55a8d4cb
  15. run details schedule 62db12c2
  16. run details schedule 62db12c2
  17. run details schedule 62db12c2
  18. run details schedule 62db12c2
  19. run details schedule 62db12c2
  20. run details schedule 62db12c2
  21. run details schedule ea352bd6
  22. run details schedule ea352bd6
  23. run details schedule ea352bd6
  24. run details schedule ea352bd6
  25. run details schedule ea352bd6
  26. run details schedule ea352bd6
  27. run details schedule ea352bd6
  28. run details schedule ea352bd6
  29. run details schedule ea352bd6
  30. run details schedule ea352bd6

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run d72cdcc0
  2. run details workflow_run d72cdcc0
  3. run details workflow_run d72cdcc0
  4. run details workflow_run d72cdcc0
  5. run details workflow_run d72cdcc0
  6. run details workflow_run d72cdcc0
  7. run details workflow_run d72cdcc0
  8. run details workflow_run d72cdcc0
  9. run details workflow_run d72cdcc0
  10. run details workflow_run d72cdcc0
  11. run details workflow_run 55a8d4cb
  12. run details workflow_run 55a8d4cb
  13. run details workflow_run 55a8d4cb
  14. run details workflow_run 55a8d4cb
  15. run details workflow_run 62db12c2
  16. run details workflow_run 62db12c2
  17. run details workflow_run 62db12c2
  18. run details workflow_run 62db12c2
  19. run details workflow_run 62db12c2
  20. run details workflow_run 62db12c2
  21. run details workflow_run ea352bd6
  22. run details workflow_run ea352bd6
  23. run details workflow_run ea352bd6
  24. run details workflow_run ea352bd6
  25. run details workflow_run ea352bd6
  26. run details workflow_run ea352bd6
  27. run details workflow_run ea352bd6
  28. run details workflow_run ea352bd6
  29. run details workflow_run ea352bd6
  30. run details workflow_run ea352bd6