Pathogen workflow status

Generated at by nextstrain/status for repos using our shared pathogen-repo-build.yaml workflow.

avian-flu #

Ingest fauna (.github/workflows/ingest-fauna.yaml)

  1. run details workflow_dispatch 769f625d

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic-ncbi.yaml)

  1. run details schedule 0780396e
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Phylogenetic Fauna (.github/workflows/phylogenetic-fauna.yaml)

  1. run details workflow_dispatch 769f625d

Phylogenetic NCBI (.github/workflows/phylogenetic-ncbi.yaml)

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  2. run details workflow_dispatch 769f625d
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  4. run details workflow_dispatch f4a55e81
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  6. run details workflow_dispatch e98c98c9
  7. run details workflow_dispatch 76ab2384

dengue #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 6f9144f7
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forecasts-ncov #

COVID-19 case counts (.github/workflows/update-ncov-case-counts.yaml)

  1. run details schedule a95328a2
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GISAID SARS-CoV-2 clade counts (.github/workflows/update-ncov-gisaid-clade-counts.yaml)

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Open SARS-CoV-2 clade counts (.github/workflows/update-ncov-open-clade-counts.yaml)

  1. run details repository_dispatch a95328a2
  2. run details repository_dispatch a95328a2
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Run models (.github/workflows/run-models.yaml)

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  28. run details workflow_dispatch 31a6163d
  29. run details workflow_dispatch 31a6163d
  30. run details workflow_dispatch 31a6163d

lassa #

Ingest (.github/workflows/ingest.yaml)

  1. run details workflow_dispatch 53a01126
  2. run details workflow_dispatch e5eafb2c

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule cafdf9f5
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Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_dispatch cafdf9f5

measles #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule bde57d18
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mpox #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

  1. run details schedule 02f660a2
  2. run details schedule 02f660a2
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  22. run details schedule 12996b6d
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  26. run details workflow_dispatch 36b3e821
  27. 🛇
    run details schedule af33cf20
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Rebuild clade-I (.github/workflows/rebuild-clade-i.yaml)

  1. run details repository_dispatch 02f660a2
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Rebuild hmpxv1 (.github/workflows/rebuild-hmpxv1.yaml)

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Rebuild hmpxv1-big (.github/workflows/rebuild-hmpxv1-big.yaml)

  1. run details repository_dispatch 02f660a2
  2. run details repository_dispatch 02f660a2
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  30. run details repository_dispatch 2019e104

Rebuild mpxv (.github/workflows/rebuild-mpxv.yaml)

  1. run details repository_dispatch 02f660a2
  2. run details repository_dispatch 02f660a2
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ncov #

Rebuild 100k sample (.github/workflows/rebuild-100k.yml)

  1. run details schedule 52edcc21
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Rebuild GISAID 21L phylogenetic datasets (.github/workflows/rebuild-gisaid-21L.yml)

  1. run details repository_dispatch 52edcc21
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Rebuild GISAID phylogenetic datasets (.github/workflows/rebuild-gisaid.yml)

  1. run details repository_dispatch 52edcc21
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Rebuild open (GenBank) phylogenetic datasets (.github/workflows/rebuild-open.yml)

  1. run details repository_dispatch 52edcc21
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ncov-ingest #

GenBank fetch and ingest (.github/workflows/fetch-and-ingest-genbank-master.yml)

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  27. run details schedule c1af4b7e
  28. run details schedule c1af4b7e
  29. run details schedule c1af4b7e
  30. run details schedule c1af4b7e

GISAID fetch and ingest (.github/workflows/fetch-and-ingest-gisaid-master.yml)

  1. run details schedule c1af4b7e
  2. run details schedule c1af4b7e
  3. run details schedule c1af4b7e
  4. run details schedule c1af4b7e
  5. run details schedule c1af4b7e
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  25. run details schedule c1af4b7e
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  27. run details schedule c1af4b7e
  28. run details schedule c1af4b7e
  29. run details schedule c1af4b7e
  30. run details schedule c1af4b7e

nipah #

Ingest (.github/workflows/ingest.yaml)

  1. run details workflow_dispatch a93ef614

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule e52d1316
  2. run details schedule e52d1316
  3. run details schedule e52d1316
  4. run details schedule e52d1316
  5. run details schedule e52d1316
  6. run details schedule e52d1316
  7. run details schedule e52d1316
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  27. run details schedule e52d1316
  28. run details schedule e52d1316
  29. run details schedule e52d1316
  30. run details schedule e52d1316

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_dispatch a93ef614

oropouche #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule b7a40e4b
  2. run details schedule b7a40e4b
  3. run details schedule b7a40e4b
  4. run details schedule b7a40e4b
  5. run details schedule b7a40e4b
  6. run details schedule b7a40e4b
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  8. run details schedule b7a40e4b
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  10. run details schedule b7a40e4b
  11. run details schedule b7a40e4b
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  25. run details schedule b7a40e4b
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  27. run details schedule b7a40e4b
  28. run details schedule b7a40e4b
  29. run details schedule b7a40e4b
  30. run details schedule b7a40e4b

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_dispatch 357dbfea
  2. run details workflow_dispatch 357dbfea

rabies #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 01f492a2
  2. run details schedule 01f492a2
  3. run details schedule 01f492a2
  4. run details schedule 01f492a2
  5. run details schedule 01f492a2
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  19. run details schedule 01f492a2
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  27. run details schedule 01f492a2
  28. run details schedule 01f492a2
  29. run details schedule 01f492a2
  30. run details schedule 01f492a2

rsv #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

  1. run details schedule 032ea5d8
  2. run details schedule 032ea5d8
  3. run details schedule 032ea5d8
  4. run details schedule 032ea5d8
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  6. run details schedule 032ea5d8
  7. run details schedule 211ba447
  8. run details schedule 211ba447
  9. run details schedule 211ba447
  10. run details schedule 211ba447
  11. run details schedule 211ba447
  12. run details schedule 211ba447

Rebuild RSV analysis (.github/workflows/rebuild.yaml)

  1. run details schedule 032ea5d8
  2. run details schedule 032ea5d8
  3. run details schedule 032ea5d8
  4. run details schedule 032ea5d8
  5. run details schedule 032ea5d8
  6. run details schedule 032ea5d8
  7. run details schedule 211ba447
  8. run details schedule 211ba447
  9. run details schedule 211ba447
  10. run details schedule 211ba447
  11. run details schedule 211ba447
  12. run details schedule 211ba447

seasonal-cov #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule d9ae40cf
  2. run details schedule d9ae40cf
  3. run details schedule d9ae40cf
  4. run details schedule d9ae40cf
  5. run details schedule d9ae40cf
  6. run details schedule d9ae40cf
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  27. run details schedule d9ae40cf
  28. run details schedule d9ae40cf
  29. run details schedule d9ae40cf
  30. run details schedule d9ae40cf

seasonal-flu #

Run Nextclade on all sequences (.github/workflows/run-nextclade.yaml)

  1. run details workflow_dispatch a83f8b43
  2. run details workflow_dispatch a83f8b43
  3. run details workflow_dispatch 9aa955e5
  4. run details workflow_dispatch 9aa955e5
  5. run details workflow_dispatch 20c935b9
  6. run details workflow_dispatch a0107400
  7. run details workflow_dispatch caa97a15
  8. run details workflow_dispatch 39a4cd9b
  9. run details workflow_dispatch efaf11b4
  10. run details workflow_dispatch c5ae1536
  11. run details workflow_dispatch 3b7ce7a1
  12. run details workflow_dispatch b0ff43d8
  13. run details workflow_dispatch 3df11d05
  14. run details workflow_dispatch e4fa9327
  15. run details workflow_dispatch 451aa8ec

Run Nextstrain builds for the nextflu-private group (.github/workflows/run-nextflu-private-builds.yaml)

  1. run details workflow_dispatch a83f8b43
  2. run details workflow_dispatch a83f8b43
  3. run details workflow_dispatch 9aa955e5
  4. run details workflow_dispatch 9aa955e5
  5. run details workflow_dispatch 20c935b9
  6. run details workflow_dispatch a0107400
  7. run details workflow_dispatch caa97a15
  8. run details workflow_dispatch efaf11b4
  9. run details workflow_dispatch c5ae1536
  10. run details workflow_dispatch 3b7ce7a1
  11. run details workflow_dispatch b0ff43d8
  12. run details workflow_dispatch 3df11d05
  13. run details workflow_dispatch e4fa9327
  14. run details workflow_dispatch e207fe49
  15. run details workflow_dispatch 451aa8ec

Run the Nextstrain public builds (.github/workflows/run-public-builds.yaml)

  1. run details workflow_dispatch a83f8b43
  2. run details workflow_dispatch a83f8b43
  3. run details workflow_dispatch 9aa955e5
  4. run details workflow_dispatch 9aa955e5
  5. run details workflow_dispatch 20c935b9
  6. run details workflow_dispatch a0107400
  7. run details workflow_dispatch caa97a15
  8. run details workflow_dispatch efaf11b4
  9. run details workflow_dispatch c5ae1536
  10. run details workflow_dispatch 3b7ce7a1
  11. run details workflow_dispatch b0ff43d8
  12. run details workflow_dispatch 3df11d05
  13. run details workflow_dispatch e4fa9327
  14. run details workflow_dispatch 451aa8ec

Run the private Nextflu builds (.github/workflows/run-private-nextflu-builds.yaml)

  1. run details workflow_dispatch a83f8b43
  2. run details workflow_dispatch a83f8b43
  3. run details workflow_dispatch 9aa955e5
  4. run details workflow_dispatch 9aa955e5
  5. run details workflow_dispatch 20c935b9
  6. run details workflow_dispatch a0107400
  7. run details workflow_dispatch caa97a15
  8. run details workflow_dispatch efaf11b4
  9. run details workflow_dispatch c5ae1536
  10. run details workflow_dispatch 3b7ce7a1
  11. run details workflow_dispatch b0ff43d8
  12. run details workflow_dispatch 3df11d05
  13. run details workflow_dispatch e4fa9327
  14. run details workflow_dispatch 451aa8ec

Upload data from fauna to S3 (.github/workflows/upload.yaml)

  1. run details workflow_dispatch a83f8b43
  2. run details workflow_dispatch a83f8b43
  3. run details workflow_dispatch 9aa955e5
  4. run details workflow_dispatch 9aa955e5
  5. run details workflow_dispatch 20c935b9
  6. run details workflow_dispatch a0107400
  7. run details workflow_dispatch 3477eaca
  8. run details workflow_dispatch efaf11b4
  9. run details workflow_dispatch 3b7ce7a1
  10. run details workflow_dispatch b0ff43d8
  11. run details workflow_dispatch 3df11d05
  12. run details workflow_dispatch e4fa9327
  13. run details workflow_dispatch 451aa8ec

WNV #

Ingest (.github/workflows/ingest.yaml)

  1. run details workflow_dispatch 3556b10a

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 388c15a2
  2. run details schedule 388c15a2
  3. run details schedule 388c15a2
  4. run details schedule 388c15a2
  5. run details schedule 388c15a2
  6. run details schedule 388c15a2
  7. run details schedule 388c15a2
  8. run details schedule 388c15a2
  9. run details schedule 388c15a2
  10. run details schedule 388c15a2
  11. run details schedule 388c15a2
  12. run details schedule 388c15a2
  13. run details schedule 388c15a2
  14. run details schedule 388c15a2
  15. run details schedule 388c15a2
  16. run details schedule 388c15a2
  17. run details schedule 388c15a2
  18. run details schedule 388c15a2
  19. run details schedule 388c15a2
  20. run details schedule 388c15a2
  21. run details schedule 388c15a2
  22. run details schedule 388c15a2
  23. run details schedule 388c15a2
  24. run details schedule e7f5f7c7
  25. run details schedule e7f5f7c7
  26. run details schedule 828e323c
  27. 🛇
    run details schedule 68d122c9
  28. run details schedule 042d799a
  29. run details schedule 3556b10a
  30. run details schedule 3556b10a

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_dispatch 388c15a2

zika #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule e304e660
  2. run details schedule e304e660
  3. run details schedule e304e660
  4. run details schedule e304e660
  5. run details schedule e304e660
  6. run details schedule e304e660
  7. run details schedule 649e495a
  8. run details schedule 649e495a
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  10. run details schedule 649e495a
  11. run details schedule 649e495a
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  17. run details schedule 649e495a
  18. run details schedule 649e495a
  19. run details schedule 649e495a
  20. run details schedule b8343f7f
  21. run details workflow_dispatch b8343f7f
  22. run details schedule b8343f7f
  23. run details schedule b8343f7f
  24. run details schedule b8343f7f
  25. run details schedule b8343f7f
  26. run details schedule b8343f7f
  27. run details schedule b8343f7f
  28. run details schedule b8343f7f
  29. run details schedule b8343f7f
  30. run details schedule b8343f7f

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_dispatch b8343f7f