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Generated at by nextstrain/status for repos using our shared pathogen-repo-build.yaml workflow.

avian-flu #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic-ncbi.yaml)

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Phylogenetic Fauna (.github/workflows/phylogenetic-fauna.yaml)

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Phylogenetic NCBI (.github/workflows/phylogenetic-ncbi.yaml)

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dengue #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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Phylogenetic (.github/workflows/phylogenetic.yaml)

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forecasts-ncov #

COVID-19 case counts (.github/workflows/update-ncov-case-counts.yaml)

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GISAID SARS-CoV-2 clade counts (.github/workflows/update-ncov-gisaid-clade-counts.yaml)

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Open SARS-CoV-2 clade counts (.github/workflows/update-ncov-open-clade-counts.yaml)

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Run models (.github/workflows/run-models.yaml)

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Run USA models (.github/workflows/run-usa-models.yaml)

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hmpv #

Ingest (.github/workflows/ingest.yaml)

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Phylogenetic (.github/workflows/phylogenetic.yaml)

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lassa #

Ingest (.github/workflows/ingest.yaml)

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Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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measles #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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mpox #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

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Rebuild clade-I (.github/workflows/rebuild-clade-i.yaml)

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Rebuild hmpxv1 (.github/workflows/rebuild-hmpxv1.yaml)

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Rebuild hmpxv1-big (.github/workflows/rebuild-hmpxv1-big.yaml)

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Rebuild mpxv (.github/workflows/rebuild-mpxv.yaml)

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mumps #

Ingest (.github/workflows/ingest.yaml)

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Phylogenetic (.github/workflows/phylogenetic.yaml)

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ncov #

Rebuild 100k sample (.github/workflows/rebuild-100k.yml)

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Rebuild GISAID 21L phylogenetic datasets (.github/workflows/rebuild-gisaid-21L.yml)

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Rebuild GISAID phylogenetic datasets (.github/workflows/rebuild-gisaid.yml)

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  16. run details repository_dispatch dfd75da2
  17. run details repository_dispatch dfd75da2
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  26. run details repository_dispatch 416b7148
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Rebuild open (GenBank) phylogenetic datasets (.github/workflows/rebuild-open.yml)

  1. run details repository_dispatch 5770a09a
  2. run details repository_dispatch 5555ece9
  3. run details repository_dispatch 5555ece9
  4. run details repository_dispatch 5555ece9
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  7. run details repository_dispatch 14fbd728
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  13. run details repository_dispatch dfd75da2
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  25. run details repository_dispatch 416b7148
  26. run details repository_dispatch 416b7148
  27. run details repository_dispatch 416b7148

ncov-ingest #

GenBank fetch and ingest (.github/workflows/fetch-and-ingest-genbank-master.yml)

  1. run details schedule 66603e8b
  2. 🛇
    run details schedule 66603e8b
  3. 🛇
    run details schedule 66603e8b
  4. run details schedule 66603e8b
  5. 🛇
    run details workflow_dispatch 66603e8b
  6. run details attempt #2 schedule fc91ecca
  7. run details schedule fc91ecca
  8. run details schedule fc91ecca
  9. run details schedule fc91ecca
  10. run details schedule fc91ecca
  11. run details attempt #2 schedule fc91ecca
  12. run details schedule fc91ecca
  13. run details attempt #2 schedule f86f15b6
  14. run details schedule f86f15b6
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  16. run details schedule 39fca5f6
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  30. run details schedule 39fca5f6
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  32. run details schedule 39fca5f6
  33. run details schedule 39fca5f6

GISAID fetch and ingest (.github/workflows/fetch-and-ingest-gisaid-master.yml)

  1. run details schedule 66603e8b
  2. 🛇
    run details schedule 66603e8b
  3. 🛇
    run details schedule 66603e8b
  4. run details schedule 66603e8b
  5. run details schedule fc91ecca
  6. run details schedule fc91ecca
  7. run details schedule fc91ecca
  8. run details schedule fc91ecca
  9. run details schedule fc91ecca
  10. run details attempt #2 schedule f86f15b6
  11. run details workflow_dispatch f86f15b6
  12. run details workflow_dispatch f86f15b6
  13. run details schedule f86f15b6
  14. run details schedule f86f15b6
  15. run details schedule 39fca5f6
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  20. run details schedule 39fca5f6
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  27. run details schedule 39fca5f6
  28. run details schedule 39fca5f6
  29. run details schedule 39fca5f6
  30. run details schedule 39fca5f6
  31. run details schedule 39fca5f6

nipah #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule 17f2147a
  2. run details schedule 17f2147a
  3. run details schedule 17f2147a
  4. run details schedule 17f2147a
  5. run details schedule 17f2147a
  6. run details schedule 17f2147a
  7. run details schedule 17f2147a
  8. run details schedule 17f2147a
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  10. run details schedule 17f2147a
  11. run details schedule 17f2147a
  12. run details schedule 17f2147a
  13. run details schedule 17f2147a
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  19. run details schedule 17f2147a
  20. run details schedule 17f2147a
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  22. run details schedule 17f2147a
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  24. run details schedule 17f2147a
  25. run details schedule 17f2147a
  26. run details schedule 17f2147a
  27. run details schedule 17f2147a
  28. run details schedule 17f2147a
  29. run details schedule 17f2147a
  30. run details schedule 17f2147a

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run 17f2147a
  2. run details workflow_run 17f2147a
  3. run details workflow_run 17f2147a
  4. run details workflow_run 17f2147a
  5. run details workflow_run 17f2147a
  6. run details workflow_run 17f2147a
  7. run details workflow_run 17f2147a
  8. run details workflow_run 17f2147a
  9. run details workflow_run 17f2147a
  10. run details workflow_run 17f2147a
  11. run details workflow_run 17f2147a
  12. run details workflow_run 17f2147a
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  14. run details workflow_run 17f2147a
  15. run details workflow_run 17f2147a
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  17. run details workflow_run 17f2147a
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  19. run details workflow_run 17f2147a
  20. run details workflow_run 17f2147a
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  22. run details workflow_run 17f2147a
  23. run details workflow_run 17f2147a
  24. run details workflow_run 17f2147a
  25. run details workflow_run 17f2147a
  26. run details workflow_run 17f2147a
  27. run details workflow_run 17f2147a
  28. run details workflow_run 17f2147a
  29. run details workflow_run 17f2147a
  30. run details workflow_run 17f2147a

oropouche #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule ffae98ba
  2. run details schedule ffae98ba
  3. run details schedule ffae98ba
  4. run details schedule ffae98ba
  5. run details schedule ffae98ba
  6. run details schedule c8600cdd
  7. run details schedule c8600cdd
  8. run details schedule c8600cdd
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  10. run details schedule c8600cdd
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  20. run details schedule c8600cdd
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  27. run details schedule c8600cdd
  28. run details schedule c8600cdd
  29. run details schedule c8600cdd
  30. run details schedule c8600cdd

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run ffae98ba
  2. run details workflow_run ffae98ba
  3. run details workflow_run ffae98ba
  4. run details workflow_run ffae98ba
  5. run details workflow_run ffae98ba
  6. run details workflow_run c8600cdd
  7. run details workflow_run c8600cdd
  8. run details workflow_run c8600cdd
  9. run details workflow_run c8600cdd
  10. run details workflow_run c8600cdd
  11. run details workflow_run c8600cdd
  12. run details workflow_run c8600cdd
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  14. run details workflow_run c8600cdd
  15. run details workflow_run c8600cdd
  16. run details workflow_run c8600cdd
  17. run details workflow_run c8600cdd
  18. run details workflow_run c8600cdd
  19. run details workflow_run c8600cdd
  20. run details workflow_run c8600cdd
  21. run details workflow_run c8600cdd
  22. run details workflow_run c8600cdd
  23. run details workflow_run c8600cdd
  24. run details workflow_run c8600cdd
  25. run details workflow_run c8600cdd
  26. run details workflow_run c8600cdd
  27. run details workflow_run c8600cdd
  28. run details workflow_run c8600cdd
  29. run details workflow_run c8600cdd
  30. run details workflow_run c8600cdd

rabies #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule f3f60c57
  2. run details schedule f3f60c57
  3. run details schedule f3f60c57
  4. run details schedule f3f60c57
  5. run details schedule f3f60c57
  6. run details schedule f3f60c57
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  15. run details schedule f3f60c57
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  20. run details schedule f3f60c57
  21. run details schedule f3f60c57
  22. run details schedule f3f60c57
  23. run details schedule f3f60c57
  24. run details workflow_dispatch f3f60c57
  25. run details schedule 8a83f78f
  26. run details schedule 8a83f78f
  27. run details schedule 8a83f78f
  28. run details schedule 8a83f78f
  29. run details schedule 8a83f78f
  30. run details schedule 8a83f78f

rsv #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

  1. run details schedule c56e5144
  2. run details schedule c56e5144
  3. run details schedule c56e5144
  4. run details schedule c56e5144
  5. run details schedule c56e5144
  6. run details schedule c56e5144
  7. run details schedule c56e5144
  8. run details schedule 6d6ea102
  9. run details schedule 6d6ea102
  10. run details schedule bff9c4e2
  11. run details schedule db2b268e
  12. run details schedule db2b268e
  13. run details schedule db2b268e

Rebuild RSV analysis (.github/workflows/rebuild.yaml)

  1. run details schedule c56e5144
  2. run details schedule c56e5144
  3. run details schedule c56e5144
  4. run details schedule c56e5144
  5. run details schedule c56e5144
  6. run details schedule c56e5144
  7. run details schedule c56e5144
  8. run details schedule 6d6ea102
  9. run details schedule 6d6ea102
  10. run details schedule 6d6ea102
  11. run details workflow_dispatch 61e4b6ae
  12. run details schedule db2b268e
  13. run details schedule db2b268e
  14. run details schedule db2b268e

rubella #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule 5e723705
  2. run details schedule 5e723705
  3. run details schedule 5e723705
  4. run details schedule 5e723705
  5. run details schedule 5e723705
  6. run details schedule 5e723705

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run 5e723705
  2. run details workflow_run 5e723705
  3. run details workflow_run 5e723705
  4. run details workflow_run 5e723705
  5. run details workflow_run 5e723705
  6. run details workflow_run 5e723705

seasonal-cov #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule 94f0dded
  2. run details schedule 94f0dded
  3. run details schedule 94f0dded
  4. run details schedule 94f0dded
  5. run details schedule 94f0dded
  6. run details schedule dd1e300f
  7. run details schedule dd1e300f
  8. run details schedule dd1e300f
  9. run details schedule dd1e300f
  10. run details schedule dd1e300f
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  12. run details schedule dd1e300f
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  14. run details schedule dd1e300f
  15. run details schedule dd1e300f
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  20. run details schedule dd1e300f
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  23. run details schedule dd1e300f
  24. run details schedule dd1e300f
  25. run details schedule dd1e300f
  26. run details schedule dd1e300f
  27. run details schedule dd1e300f
  28. run details schedule dd1e300f
  29. run details schedule dd1e300f
  30. run details schedule dd1e300f

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run 94f0dded
  2. run details workflow_run 94f0dded
  3. run details workflow_run 94f0dded
  4. run details workflow_run 94f0dded
  5. run details workflow_run 94f0dded
  6. run details workflow_run dd1e300f
  7. run details workflow_run dd1e300f
  8. run details workflow_run dd1e300f
  9. run details workflow_run dd1e300f
  10. run details workflow_run dd1e300f
  11. run details workflow_run dd1e300f
  12. run details workflow_run dd1e300f
  13. run details workflow_run dd1e300f
  14. run details workflow_run dd1e300f
  15. run details workflow_run dd1e300f
  16. run details workflow_run dd1e300f
  17. run details workflow_run dd1e300f
  18. run details workflow_run dd1e300f
  19. run details workflow_run dd1e300f
  20. run details workflow_run dd1e300f
  21. run details workflow_run dd1e300f
  22. run details workflow_run dd1e300f
  23. run details workflow_run dd1e300f
  24. run details workflow_run dd1e300f
  25. run details workflow_run dd1e300f
  26. run details workflow_run dd1e300f
  27. run details workflow_run dd1e300f
  28. run details workflow_run dd1e300f
  29. run details workflow_run dd1e300f
  30. run details workflow_run dd1e300f

seasonal-flu #

Ingest (.github/workflows/ingest.yaml)

  1. run details workflow_dispatch 9f268730
  2. run details workflow_dispatch 6eb1dc70
  3. run details workflow_dispatch 90e0f1a6
  4. run details workflow_dispatch 90e0f1a6
  5. run details workflow_dispatch 90e0f1a6

Run Nextclade on all sequences (.github/workflows/run-nextclade.yaml)

  1. run details workflow_dispatch a623637c
  2. run details workflow_dispatch a623637c
  3. run details workflow_dispatch 0f0e4542

Run Nextstrain builds for the nextflu-private group (.github/workflows/run-nextflu-private-builds.yaml)

  1. run details workflow_dispatch 268b0632
  2. run details workflow_dispatch 9f268730
  3. run details workflow_dispatch 6eb1dc70
  4. run details workflow_dispatch 2434d67d
  5. run details workflow_dispatch c7d7ebe7
  6. run details workflow_dispatch 8c107136
  7. run details workflow_dispatch 5c912bfb
  8. run details workflow_dispatch 5b98987d
  9. run details workflow_dispatch 5b98987d
  10. run details workflow_dispatch 70ec48b7
  11. run details workflow_dispatch c8484c73
  12. run details workflow_dispatch a623637c
  13. run details workflow_dispatch a623637c
  14. run details workflow_dispatch 0f0e4542

Run the Nextstrain public builds (.github/workflows/run-public-builds.yaml)

  1. run details workflow_dispatch 268b0632
  2. run details workflow_dispatch 9f268730
  3. run details workflow_dispatch 6eb1dc70
  4. run details workflow_dispatch 2434d67d
  5. run details workflow_dispatch c7d7ebe7
  6. run details workflow_dispatch 8c107136
  7. run details workflow_dispatch 5c912bfb
  8. run details workflow_dispatch 5b98987d
  9. run details workflow_dispatch 5b98987d
  10. run details workflow_dispatch 70ec48b7
  11. run details workflow_dispatch c8484c73
  12. run details workflow_dispatch a623637c
  13. run details workflow_dispatch a623637c
  14. run details workflow_dispatch 0f0e4542

Run the private Nextflu builds (.github/workflows/run-private-nextflu-builds.yaml)

  1. run details schedule 268b0632
  2. run details workflow_dispatch 2434d67d
  3. run details workflow_dispatch c7d7ebe7
  4. run details workflow_dispatch 8c107136
  5. run details workflow_dispatch 5c912bfb
  6. run details workflow_dispatch 5b98987d
  7. run details workflow_dispatch 5b98987d
  8. run details workflow_dispatch 70ec48b7
  9. run details workflow_dispatch c8484c73
  10. run details workflow_dispatch a623637c
  11. run details workflow_dispatch a623637c
  12. run details workflow_dispatch 0f0e4542

Upload data from fauna to S3 (.github/workflows/upload.yaml)

  1. run details workflow_dispatch 268b0632
  2. run details workflow_dispatch 9f268730
  3. run details workflow_dispatch 6eb1dc70
  4. run details workflow_dispatch 2434d67d
  5. run details workflow_dispatch c7d7ebe7
  6. run details workflow_dispatch 8c107136
  7. run details workflow_dispatch 5c912bfb
  8. run details workflow_dispatch 5b98987d
  9. run details workflow_dispatch 5b98987d
  10. run details workflow_dispatch 70ec48b7
  11. run details workflow_dispatch c8484c73
  12. run details workflow_dispatch a623637c
  13. run details workflow_dispatch a623637c
  14. run details workflow_dispatch 0f0e4542

WNV #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. run details schedule 3d43d25b
  2. run details schedule 3d43d25b
  3. run details schedule 3d43d25b
  4. run details schedule 3d43d25b
  5. run details schedule 3d43d25b
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  28. run details schedule 3d43d25b
  29. run details schedule 3d43d25b
  30. run details attempt #2 schedule 036de0e3
  31. run details schedule 036de0e3

yellow-fever #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule 2e24a635
  2. run details schedule 2e24a635
  3. run details schedule 2e24a635
  4. run details schedule 2e24a635
  5. run details schedule 2e24a635
  6. run details schedule 2e24a635
  7. run details schedule 2e24a635
  8. run details schedule 2e24a635
  9. run details schedule 2e24a635
  10. run details schedule 2e24a635
  11. run details schedule 2e24a635
  12. run details schedule 2e24a635
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  20. run details schedule 2e24a635
  21. run details schedule 230270ba
  22. run details schedule 230270ba
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  24. run details schedule 28cf0a19
  25. run details schedule 28cf0a19
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  27. run details schedule 28cf0a19
  28. run details schedule 28cf0a19
  29. run details schedule 28cf0a19
  30. run details schedule 28cf0a19

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. run details workflow_run 2e24a635
  2. run details workflow_run 2e24a635
  3. run details workflow_run 2e24a635
  4. run details workflow_run 2e24a635
  5. run details workflow_run 2e24a635
  6. run details workflow_run 2e24a635
  7. run details workflow_run 2e24a635
  8. run details workflow_run 2e24a635
  9. run details workflow_run 2e24a635
  10. run details workflow_run 2e24a635
  11. run details workflow_run 2e24a635
  12. run details workflow_run 2e24a635
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  14. run details workflow_run 2e24a635
  15. run details workflow_run 2e24a635
  16. run details workflow_run 2e24a635
  17. run details workflow_run 2e24a635
  18. run details workflow_run 2e24a635
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  20. run details workflow_run 2e24a635
  21. run details workflow_run 230270ba
  22. run details workflow_run 230270ba
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  24. run details workflow_run 28cf0a19
  25. run details workflow_run 28cf0a19
  26. run details workflow_run 28cf0a19
  27. run details workflow_run 28cf0a19
  28. run details workflow_run 28cf0a19
  29. run details workflow_run 28cf0a19
  30. run details workflow_run 28cf0a19

zika #

Ingest (.github/workflows/ingest.yaml)

  1. run details schedule 50a7b54d
  2. run details schedule f285cbd8
  3. run details schedule f285cbd8
  4. run details schedule f285cbd8
  5. run details schedule f285cbd8
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  27. run details schedule f285cbd8
  28. run details schedule f285cbd8
  29. run details schedule f285cbd8
  30. run details schedule f285cbd8

Phylogenetic (.github/workflows/phylogenetic.yaml)

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