Pathogen workflow status

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Generated at by nextstrain/status for repos using our shared pathogen-repo-build.yaml workflow.

avian-flu #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic-ncbi.yaml)

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Run GenoFLU on curated GISAID data (.github/workflows/genoflu-gisaid.yaml)

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chikv #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

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Phylogenetic (.github/workflows/phylogenetic.yaml)

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dengue #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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ebola #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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forecasts-flu #

Run models (.github/workflows/run-models.yaml)

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forecasts-ncov #

COVID-19 case counts (.github/workflows/update-ncov-case-counts.yaml)

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GISAID SARS-CoV-2 clade counts (.github/workflows/update-ncov-gisaid-clade-counts.yaml)

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Open SARS-CoV-2 clade counts (.github/workflows/update-ncov-open-clade-counts.yaml)

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Run models (.github/workflows/run-models.yaml)

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Run USA models (.github/workflows/run-usa-models.yaml)

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hmpv #

Ingest (.github/workflows/ingest.yaml)

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Phylogenetic (.github/workflows/phylogenetic.yaml)

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lassa #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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Phylogenetic (.github/workflows/phylogenetic.yaml)

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measles #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

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mpox #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

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    run details schedule 1ef5ef2a

Rebuild clade-I (.github/workflows/rebuild-clade-i.yaml)

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    run details repository_dispatch 4d057604

Rebuild hmpxv1 (.github/workflows/rebuild-hmpxv1.yaml)

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    run details repository_dispatch 0bc555a4
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    run details repository_dispatch 4d057604

Rebuild hmpxv1-big (.github/workflows/rebuild-hmpxv1-big.yaml)

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    run details repository_dispatch 0bc555a4
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    run details repository_dispatch 03e168ff
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    run details repository_dispatch 4d057604

Rebuild mpxv (.github/workflows/rebuild-mpxv.yaml)

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    run details repository_dispatch 0bc555a4
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    run details repository_dispatch 03e168ff
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    run details repository_dispatch 03e168ff
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    run details repository_dispatch 4d057604
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    run details repository_dispatch 4d057604
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    run details repository_dispatch 4d057604

mumps #

Ingest (.github/workflows/ingest.yaml)

  1. ✔
    run details schedule d81a5d36
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    run details schedule d81a5d36
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    run details schedule d81a5d36
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Phylogenetic (.github/workflows/phylogenetic.yaml)

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    run details workflow_run d81a5d36
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    run details workflow_run d81a5d36
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    run details workflow_run ff85c4d6
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    run details workflow_run fbebb1d8
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    run details workflow_run fbebb1d8
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    run details workflow_run fbebb1d8

ncov #

Rebuild 100k sample (.github/workflows/rebuild-100k.yml)

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    run details schedule f387ff65
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    run details schedule c335eb1e
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    run details schedule 655bdb36
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Rebuild open (GenBank) phylogenetic datasets (.github/workflows/rebuild-open.yml)

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    run details workflow_dispatch deb02903
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    run details repository_dispatch f387ff65
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    run details repository_dispatch 655bdb36
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    run details repository_dispatch 655bdb36
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    run details repository_dispatch 655bdb36

ncov-ingest #

GenBank fetch and ingest (.github/workflows/fetch-and-ingest-genbank-master.yml)

  1. ✔
    run details schedule c490d27f
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    run details attempt #2 schedule 6d065264
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    run details schedule 6d065264
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    run details schedule 366ec920
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    run details schedule 6a1a8029
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GISAID fetch and ingest (.github/workflows/fetch-and-ingest-gisaid-master.yml)

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    run details workflow_dispatch 6d065264
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    run details attempt #2 workflow_dispatch 6d065264
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    run details workflow_dispatch 6d065264
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    run details workflow_dispatch 9c9cc476
  5. 🛇
    run details workflow_dispatch b5cf23fa

nipah #

Ingest (.github/workflows/ingest.yaml)

  1. ✔
    run details schedule 279c65db
  2. ✔
    run details schedule 279c65db
  3. ✔
    run details schedule c76083b4
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    run details schedule f77b9fba

Phylogenetic (.github/workflows/phylogenetic.yaml)

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    run details workflow_run 279c65db
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    run details workflow_run f77b9fba
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    run details workflow_run f77b9fba
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    run details workflow_run f77b9fba
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    run details workflow_run f77b9fba
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    run details workflow_run f77b9fba
  29. ✔
    run details workflow_run f77b9fba
  30. ✔
    run details workflow_run f77b9fba

norovirus #

Ingest (.github/workflows/ingest.yaml)

  1. ✔
    run details schedule 49a83c5d
  2. ✔
    run details schedule 49a83c5d
  3. ✔
    run details schedule 49a83c5d
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    run details schedule 629f3093
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    run details schedule 629f3093
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    run details schedule 629f3093
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    run details schedule 629f3093
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    run details schedule 76707d27
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    run details schedule 76707d27
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    run details schedule 76707d27
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    run details schedule 76707d27

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. ✔
    run details workflow_run 49a83c5d
  2. ✔
    run details workflow_run 49a83c5d
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    run details workflow_run 49a83c5d
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    run details workflow_run 629f3093
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    run details workflow_run 629f3093
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    run details workflow_run 629f3093
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    run details workflow_run 629f3093
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    run details workflow_run 629f3093
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    run details workflow_run e8e58d18
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    run details workflow_run 76707d27
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    run details workflow_run 76707d27
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    run details workflow_run 76707d27
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    run details workflow_run 76707d27
  29. ✔
    run details workflow_run 76707d27
  30. ✔
    run details workflow_run 76707d27

oropouche #

Ingest (.github/workflows/ingest.yaml)

  1. ✔
    run details schedule 36c4a04e
  2. ✔
    run details schedule 36c4a04e
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    run details schedule 36c4a04e
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    run details schedule 6449f645
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    run details schedule 6449f645
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    run details schedule 6449f645
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    run details schedule 6449f645
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    run details schedule 5102b3f0

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. ✔
    run details workflow_run 36c4a04e
  2. ✔
    run details workflow_run 36c4a04e
  3. ✔
    run details workflow_run 36c4a04e
  4. ✔
    run details workflow_run 6449f645
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    run details workflow_run 6449f645
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    run details workflow_run 6449f645
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    run details workflow_run 6449f645
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    run details workflow_run 6449f645
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    run details workflow_run 6449f645
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    run details workflow_run 6449f645
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    run details workflow_run 6449f645
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    run details workflow_run 6449f645
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    run details workflow_run 6449f645
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    run details workflow_run 6449f645
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    run details workflow_run 6449f645
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    run details workflow_run 6449f645
  17. ⭘
    run details workflow_run 5102b3f0
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    run details workflow_run 5102b3f0
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    run details workflow_run 5102b3f0
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    run details workflow_run 5102b3f0
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    run details workflow_run 5102b3f0
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    run details workflow_run 5102b3f0
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    run details workflow_run 5102b3f0
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    run details workflow_run 5102b3f0
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    run details workflow_run 5102b3f0
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    run details workflow_run 5102b3f0
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    run details workflow_run 5102b3f0
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    run details workflow_run 5102b3f0
  29. ✔
    run details workflow_run 5102b3f0
  30. ✔
    run details workflow_run 5102b3f0

rabies #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. ✔
    run details schedule 28699379
  2. ✔
    run details schedule 28699379
  3. ✔
    run details schedule 28699379
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    run details schedule 8715e995
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    run details schedule 8715e995
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    run details schedule 8715e995
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    run details schedule 8715e995
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    run details schedule 8715e995
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    run details schedule 8715e995
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    run details schedule 8715e995
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    run details schedule 8715e995
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    run details schedule 8715e995
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    run details schedule 8715e995
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    run details schedule 8715e995
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    run details schedule 8715e995
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    run details schedule 8715e995
  17. ✘
    run details schedule 4d39d1b1
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    run details schedule 4d39d1b1
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    run details schedule 4d39d1b1
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    run details schedule 4d39d1b1
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    run details schedule 4d39d1b1
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    run details schedule 4d39d1b1
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    run details schedule 4d39d1b1
  29. ✔
    run details schedule 4d39d1b1
  30. ✔
    run details schedule 4d39d1b1

rsv #

Fetch and ingest (.github/workflows/fetch-and-ingest.yaml)

  1. ✔
    run details schedule 7e6ccf00
  2. ✔
    run details schedule 52d6576f
  3. ✔
    run details schedule 77cc6df2
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    run details schedule 77cc6df2
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    run details schedule 77cc6df2
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    run details schedule fa36ee2a
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    run details schedule fa36ee2a
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    run details schedule d61a2f80
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    run details schedule d61a2f80
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    run details schedule d61a2f80
  11. ✔
    run details schedule d61a2f80
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    run details schedule d61a2f80
  13. ✔
    run details schedule b6ba12b6

Rebuild RSV analysis (.github/workflows/rebuild.yaml)

  1. ✔
    run details schedule 7e6ccf00
  2. ✔
    run details schedule 52d6576f
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    run details schedule 52d6576f
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    run details schedule 77cc6df2
  5. ✔
    run details schedule 77cc6df2
  6. ✔
    run details attempt #2 schedule fa36ee2a
  7. ✘
    run details schedule fa36ee2a
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    run details schedule fa36ee2a
  9. ✔
    run details schedule d61a2f80
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    run details schedule d61a2f80
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    run details schedule d61a2f80
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    run details schedule d61a2f80
  13. ✔
    run details schedule d61a2f80
  14. ✔
    run details schedule b6ba12b6

rubella #

Ingest (.github/workflows/ingest.yaml)

  1. ✔
    run details schedule 76ffa592
  2. ✔
    run details schedule 76ffa592
  3. ✔
    run details schedule 76ffa592
  4. ✔
    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
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    run details schedule 1b4af5cf
  17. ✘
    run details schedule 0c34b0e1
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    run details schedule 0c34b0e1
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    run details schedule 0c34b0e1
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    run details schedule 0c34b0e1
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    run details schedule 0c34b0e1
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    run details schedule 0c34b0e1
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    run details schedule 0c34b0e1
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    run details schedule 0c34b0e1
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    run details schedule 0c34b0e1
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    run details schedule 0c34b0e1
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    run details schedule 0c34b0e1
  28. ✔
    run details schedule 0c34b0e1
  29. ✔
    run details schedule 0c34b0e1
  30. ✔
    run details schedule 0c34b0e1

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. ✔
    run details workflow_run 76ffa592
  2. ✔
    run details workflow_run 76ffa592
  3. ✔
    run details workflow_run 76ffa592
  4. ✔
    run details workflow_run 1b4af5cf
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    run details workflow_run 1b4af5cf
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    run details workflow_run 1b4af5cf
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    run details workflow_run 1b4af5cf
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    run details workflow_run 1b4af5cf
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    run details workflow_run 1b4af5cf
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    run details workflow_run 1b4af5cf
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    run details workflow_run 1b4af5cf
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    run details workflow_run 1b4af5cf
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    run details workflow_run 1b4af5cf
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    run details workflow_run 1b4af5cf
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    run details workflow_run 1b4af5cf
  16. ✔
    run details workflow_run 1b4af5cf
  17. ⭘
    run details workflow_run 0c34b0e1
  18. ✔
    run details workflow_run 0c34b0e1
  19. ✔
    run details workflow_run 0c34b0e1
  20. ✔
    run details workflow_run 0c34b0e1
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    run details workflow_run 0c34b0e1
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    run details workflow_run 0c34b0e1
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    run details workflow_run 0c34b0e1
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    run details workflow_run 0c34b0e1
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    run details workflow_run 0c34b0e1
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    run details workflow_run 0c34b0e1
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    run details workflow_run 0c34b0e1
  28. ✔
    run details workflow_run 0c34b0e1
  29. ✔
    run details workflow_run 0c34b0e1
  30. ✔
    run details workflow_run 0c34b0e1

seasonal-cov #

Ingest (.github/workflows/ingest.yaml)

  1. ✔
    run details schedule 1c1e9abd
  2. ✔
    run details schedule 1c1e9abd
  3. ✔
    run details schedule 1c1e9abd
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
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    run details schedule 8417ec9d
  17. ✘
    run details schedule 008cc695
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    run details schedule 008cc695
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    run details schedule 008cc695
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    run details schedule 008cc695
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    run details schedule 008cc695
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    run details schedule 008cc695
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    run details schedule 008cc695
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    run details schedule 008cc695
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    run details schedule 008cc695
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    run details schedule 008cc695
  28. ✔
    run details schedule 008cc695
  29. ✔
    run details schedule 008cc695
  30. ✔
    run details schedule 008cc695

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. ✔
    run details workflow_run 1c1e9abd
  2. ✔
    run details workflow_run 1c1e9abd
  3. ✔
    run details workflow_run 1c1e9abd
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
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    run details workflow_run 8417ec9d
  17. ⭘
    run details workflow_run 008cc695
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    run details workflow_run 008cc695
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    run details workflow_run 008cc695
  20. ✔
    run details workflow_run 008cc695
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    run details workflow_run 008cc695
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    run details workflow_run 008cc695
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    run details workflow_run 008cc695
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    run details workflow_run 008cc695
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    run details workflow_run 008cc695
  26. ✔
    run details workflow_run 008cc695
  27. ✔
    run details workflow_run 008cc695
  28. ✔
    run details workflow_run 008cc695
  29. ✔
    run details workflow_run 008cc695
  30. ✔
    run details workflow_run 008cc695

seasonal-flu #

Ingest open (.github/workflows/ingest-open.yaml)

  1. ✔
    run details schedule 2057320c
  2. ✔
    run details schedule 2057320c
  3. ✔
    run details schedule 2057320c
  4. ✔
    run details schedule ec5531b2
  5. ✔
    run details schedule ec5531b2
  6. ✔
    run details schedule ec5531b2
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    run details schedule ec5531b2
  8. ✔
    run details schedule ec5531b2
  9. ✔
    run details schedule c96d9e24
  10. ✔
    run details schedule c96d9e24

Run Nextstrain builds for the nextflu-private group (.github/workflows/run-nextflu-private-builds.yaml)

  1. ✔
    run details workflow_dispatch ec5531b2
  2. ✔
    run details workflow_dispatch 66d6f39e
  3. ✔
    run details workflow_dispatch f1fc8b9f
  4. ✔
    run details workflow_dispatch af1fb390
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    run details workflow_dispatch f9698da0
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    run details workflow_dispatch b13c3468
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    run details workflow_dispatch 1b09d322
  8. ✔
    run details workflow_dispatch 53c73be7
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    run details workflow_dispatch 5cf1cf87
  10. ✔
    run details workflow_dispatch c08add85
  11. ✔
    run details workflow_dispatch 6fe1972a
  12. ✔
    run details workflow_dispatch 0e4fe321

Run the Nextstrain public builds (.github/workflows/run-public-builds.yaml)

  1. ✔
    run details workflow_dispatch ec5531b2
  2. ✔
    run details workflow_dispatch 66d6f39e
  3. ✔
    run details workflow_dispatch f1fc8b9f
  4. ✔
    run details workflow_dispatch af1fb390
  5. ✔
    run details workflow_dispatch f9698da0
  6. ✔
    run details workflow_dispatch b13c3468
  7. ✔
    run details workflow_dispatch 1b09d322
  8. ✔
    run details workflow_dispatch 53c73be7
  9. ✔
    run details workflow_dispatch 5cf1cf87
  10. ✔
    run details workflow_dispatch c08add85
  11. ✔
    run details workflow_dispatch 6fe1972a
  12. ✔
    run details workflow_dispatch 0e4fe321

Run the private Nextflu builds (.github/workflows/run-private-nextflu-builds.yaml)

  1. ✔
    run details schedule ec5531b2
  2. ✔
    run details schedule f9698da0
  3. ✔
    run details schedule c08add85

Upload data from fauna to S3 (.github/workflows/upload.yaml)

  1. ✔
    run details workflow_dispatch ec5531b2
  2. ✔
    run details workflow_dispatch 66d6f39e
  3. ✔
    run details workflow_dispatch f1fc8b9f
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    run details workflow_dispatch af1fb390
  5. ✘
    run details workflow_dispatch 302aedf6
  6. ✔
    run details workflow_dispatch f9698da0
  7. ✘
    run details workflow_dispatch b13c3468
  8. ✔
    run details workflow_dispatch b13c3468
  9. ✔
    run details workflow_dispatch 1b09d322
  10. ✔
    run details workflow_dispatch 53c73be7
  11. ✔
    run details workflow_dispatch 5cf1cf87
  12. ✔
    run details workflow_dispatch c08add85
  13. ✔
    run details workflow_dispatch 6fe1972a
  14. ✔
    run details workflow_dispatch 0e4fe321

tb #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. ✔
    run details schedule d23ba2b8
  2. ✔
    run details schedule d23ba2b8
  3. ✔
    run details schedule d23ba2b8
  4. ✔
    run details schedule d23ba2b8
  5. ✔
    run details attempt #2 schedule d23ba2b8
  6. ✘
    run details schedule d23ba2b8
  7. ✔
    run details schedule d23ba2b8
  8. ✔
    run details schedule d23ba2b8
  9. ✔
    run details workflow_dispatch d23ba2b8
  10. ✔
    run details schedule de2be875
  11. ✔
    run details schedule de2be875
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    run details schedule de2be875
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    run details schedule de2be875
  14. ✔
    run details schedule de2be875
  15. ✔
    run details schedule de2be875

WNV #

Ingest to phylogenetic (.github/workflows/ingest-to-phylogenetic.yaml)

  1. ✔
    run details schedule c6b9b4ef
  2. ✔
    run details schedule c6b9b4ef
  3. ✔
    run details schedule c6b9b4ef
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    run details schedule c2797ab9
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    run details schedule c2797ab9
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    run details schedule c2797ab9
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    run details schedule c2797ab9
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    run details schedule c95d368c
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    run details schedule c95d368c
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    run details schedule c95d368c
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    run details schedule c95d368c
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    run details schedule c95d368c
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    run details schedule c95d368c
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    run details schedule c95d368c
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    run details schedule c95d368c
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    run details schedule c95d368c
  17. ✘
    run details schedule b3eaac20
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    run details schedule b3eaac20
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  28. ✔
    run details schedule b3eaac20
  29. ✔
    run details schedule b3eaac20
  30. ✔
    run details schedule b3eaac20

yellow-fever #

Ingest (.github/workflows/ingest.yaml)

  1. ✔
    run details schedule 69916a4f
  2. ✔
    run details schedule 69916a4f
  3. ✔
    run details schedule 69916a4f
  4. ✔
    run details schedule 34ba2c28
  5. ✔
    run details schedule 34ba2c28
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    run details schedule 34ba2c28
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    run details schedule 34ba2c28
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    run details schedule 34ba2c28
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    run details schedule 34ba2c28
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    run details schedule 34ba2c28
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    run details schedule 34ba2c28
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    run details schedule 34ba2c28
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    run details schedule 34ba2c28
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    run details schedule 34ba2c28
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    run details schedule 34ba2c28
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    run details schedule 34ba2c28
  17. ✘
    run details schedule e098c7e6
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    run details schedule e098c7e6
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    run details schedule e098c7e6
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    run details schedule e098c7e6
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    run details schedule e098c7e6
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    run details schedule e098c7e6
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    run details schedule e098c7e6
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    run details schedule e098c7e6
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    run details schedule e098c7e6
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    run details schedule e098c7e6
  28. ✔
    run details schedule e098c7e6
  29. ✔
    run details schedule e098c7e6
  30. ✔
    run details schedule e098c7e6

Phylogenetic (.github/workflows/phylogenetic.yaml)

  1. ✔
    run details workflow_run 69916a4f
  2. ✔
    run details workflow_run 69916a4f
  3. ✔
    run details workflow_run 69916a4f
  4. ✔
    run details workflow_run 34ba2c28
  5. ✔
    run details workflow_run 34ba2c28
  6. ✔
    run details workflow_run 34ba2c28
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    run details workflow_run 34ba2c28
  8. ✔
    run details workflow_run 34ba2c28
  9. ✔
    run details workflow_run 34ba2c28
  10. ✔
    run details workflow_run 34ba2c28
  11. ✔
    run details workflow_run 34ba2c28
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    run details workflow_run 34ba2c28
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    run details workflow_run 34ba2c28
  14. ✔
    run details workflow_run 34ba2c28
  15. ✔
    run details workflow_run 34ba2c28
  16. ✔
    run details workflow_run 34ba2c28
  17. ⭘
    run details workflow_run e098c7e6
  18. ✔
    run details workflow_run e098c7e6
  19. ✔
    run details workflow_run e098c7e6
  20. ✔
    run details workflow_run e098c7e6
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    run details workflow_run e098c7e6
  22. ✔
    run details workflow_run e098c7e6
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    run details workflow_run e098c7e6
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    run details workflow_run e098c7e6
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    run details workflow_run e098c7e6
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    run details workflow_run e098c7e6
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    run details workflow_run e098c7e6
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    run details workflow_run e098c7e6
  29. ✔
    run details workflow_run e098c7e6
  30. ✔
    run details workflow_run e098c7e6

zika #

Ingest (.github/workflows/ingest.yaml)

  1. ✔
    run details schedule f3c8e5a4
  2. ✔
    run details schedule 39f49e40
  3. ✔
    run details schedule 39f49e40
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    run details schedule 2c470df8
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    run details schedule 2c470df8
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    run details schedule 2c470df8
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    run details schedule 2c470df8
  8. ✔
    run details schedule c4a64d81
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    run details schedule c4a64d81
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    run details schedule c4a64d81
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    run details schedule c4a64d81
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    run details schedule c4a64d81
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    run details schedule c4a64d81
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    run details schedule c4a64d81
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    run details schedule c4a64d81
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    run details schedule c4a64d81
  17. ✘
    run details schedule b3009b3d
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    run details schedule b3009b3d
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    run details schedule b3009b3d
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    run details schedule b3009b3d
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    run details schedule b3009b3d
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    run details schedule b3009b3d
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    run details schedule b3009b3d
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